PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g10200.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 193aa    MW: 21523.3 Da    PI: 5.3344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g10200.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.2e-2057106355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++++g
  Vang03g10200.3  57 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALAMRG 106
                     9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3156115IPR001471AP2/ERF domain
PROSITE profilePS5103223.4256114IPR001471AP2/ERF domain
SMARTSM003802.0E-3656120IPR001471AP2/ERF domain
PfamPF008471.8E-1456106IPR001471AP2/ERF domain
PRINTSPR003675.8E-115768IPR001471AP2/ERF domain
CDDcd000185.80E-2057115No hitNo description
SuperFamilySSF541712.75E-2357116IPR016177DNA-binding domain
PRINTSPR003675.8E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTSSFCSLPF NENDSQEMLL YQLLAQPAAP SSHSITSSLS SLSHGSSVAE AEVSVSYRGV  60
RRRPWGKYAA EIRDSTRNGV RVWLGTFDTA EAAALAYDQA ALAMRGSMAV LNFPAEMVWQ  120
SLRKMEYGFD QGCSPVLELK KRHSINRKWE RNKLKNKVQE EEEEGVSQNV MVLEDLGAEY  180
LEHLLTVSQD MI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-2757114663ATERF1
2gcc_A3e-2757114663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491591.11e-113PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC83e-62ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9VLR51e-127A0A0L9VLR5_PHAAN; Uncharacterized protein
STRINGGLYMA19G43815.14e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-45ethylene response factor 1